Nextflow with AWS Batch

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The content of this workshop is derived from a tutorial created by the nice folks at Seqera Labs, kudos to them! We won’t create or own pipelines and tweak code, but rather jump right in with a small proof-of-concept pipeline, which we will run locally in containers, submit locally to AWS Batch and run a batch job that submits to AWS Batch.

Overview

During this workshop you will implement a proof of concept of a RNA-seq pipeline. The goal of this workshop is not te become a Bioinformatician nor a Nextflow guru, but to get familiar with the concepts of nextflow and AWS Batch.

The estimated cost for running this 1.5 hour workshop will be less than $5.